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Citing CMDGA
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Assay
1
single cell isolation followed by RNA-seq
Pipeline status
1
active
Pipeline groups
1
A short overview of the main analysis steps for eQTL Catalogue
1
ATAC-seq Pipeline (ENCODE replicated)
1
ATAC-seq Pipeline (ENCODE unreplicated)
1
ATAC-seq Pipeline Cebola Lab
1
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
1
ATAC-seq Pipeline Gaulton Lab
1
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
1
Activity by Contact
1
Annotation pipeline popularVote (popV for short) from Tabula Sapiens
1
ChIP-Atlas Pipeline
1
ChIP-seq Pipeline (ENCODE)
1
ChIP-seq Pipeline Cebola Lab
1
ChIP-seq Pipeline Ellinor Lab
1
DNase-seq Pipeline (ENCODE)
1
Histone ChIP-seq Pipeline 2 (ENCODE replicated)
1
Histone ChIP-seq Pipeline 2 (ENCODE unreplicated)
1
Pipeline holder for unknown or undefined pipeline
1
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
1
RNA-seq Pipeline (Paired-ended, ENCODE)
1
RNA-seq Pipeline (Single-ended, ENCODE)
1
RNA-seq Pipeline 2 (Paired-ended, ENCODE)
1
RNA-seq Pipeline 2 (Single-ended, ENCODE)
1
RNA-seq Pipeline Cebola Lab
1
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
1
TF ChIP-seq Pipeline 2 (ENCODE replicated)
1
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
1
scRNA-seq clustering for HPAP dataset
Developed by
1
Kyle Gaulton, UCSD
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Pipeline
DPL066WNI
active
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
Assays:
single cell isolation followed by RNA-seq