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Assay
  • 1single cell isolation followed by RNA-seq
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  • 1active
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  • 1A short overview of the main analysis steps for eQTL Catalogue
  • 1ATAC-seq Pipeline (ENCODE replicated)
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  • 1ATAC-seq Pipeline Cebola Lab
  • 1ATAC-seq Pipeline Cebola Lab (Hepatocytes)
  • 1ATAC-seq Pipeline Gaulton Lab
  • 1ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
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  • 1Pseudo-bulk gene expression and differential activity (Elgamal et al.)
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  • 1RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
  • 1TF ChIP-seq Pipeline 2 (ENCODE replicated)
  • 1TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
  • 1scRNA-seq clustering for HPAP dataset
Developed by
  • 1Kyle Gaulton, UCSD

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  • Pipeline

    DPL066WNI

    active

    Pseudo-bulk gene expression and differential activity (Elgamal et al.)
    Assays: single cell isolation followed by RNA-seq
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