Search – Common Metabolic Diseases Genome Atlas

Showing 7 of 7 results

Publication
released
Combining SNP-to-gene linking strategies to identify disease genes and assess disease omnigenicity
Steven Gazal, Omer Weissbrod, Farhad Hormozdiari, et al.
Nature Genetics. 2022-06-06;(2022)
- doi:10.1101/2021.08.02.21261488
URL: https://doi.org/10.5281/zenodo.6354007
Data summary: The list of 19,995 genes, summary statistics of the 63 independent traits, training and validation…
Data summary: Links for all data sets used to create S2G strategies are provided in Supplementary Table 26.
URL: http://www.ukbiobank.ac.uk/
Data summary: Access to the UK Biobank resource is available via application
URL: https://www.ebi.ac.uk/gwas/api/search/downloads/full
Data summary: The GWAS Catalog is available
URL: https://raw.githubusercontent.com/opentargets/genetics-gold-standards/master/gold_standards/processed/gwas_gold_standards.191108.tsv
Data summary: Open Targets SNP–gene pairs are available
URL: https://www.dropbox.com/s/kz2c49rpm2yanf5/all_byCS_rev1.txt?dl=0
Data summary: SNP–gene pairs from ref48 are available
URL: https://alkesgroup.broadinstitute.org/cS2G/code
Data summary: The code to estimate precision and recall of S2G strategies and the code to create combined S2G…
URL: https://doi.org/10.5281/zenodo.6415925
Data summary: The code to estimate precision and recall of S2G strategies and the code to create combined S2G…
Publication
released
CommonMind Consortium provides transcriptomic and epigenomic data for Schizophrenia and Bipolar Disorder
Gabriel E. Hoffman, Jaroslav Bendl, Georgios Voloudakis, et al.
Sci Data. 2019-09-24;6(1):180.
Publication
released
The single-cell transcriptomic landscape of early human diabetic nephropathy
Parker C Wilson, Haojia Wu, Yuhei Kirita, et al.
Proc Natl Acad Sci U S A. 2019-09-24;116(39):19619-19625.
Publication
released
Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock
Judhajeet Ray, Paul R Munn, Anniina Vihervaara, et al.
Proc Natl Acad Sci U S A. 2019-09-24;116(39):19431-19439.
Available supplemental data: website
Data summary: Hi-C. Human K562 and Drosophila S2 cells were subjected to HS or not (NHS) and cross-linked with…
Publication
released
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
Javierre BM, Burren OS, Wilder SP, et al.
2016-11-17;167(5):1369-1384.
URL: https://osf.io/u8tzp
Publication
released
β-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance
Boris Novakovic, Ehsan Habibi, Shuang-Yin Wang, et al.
Cell. 2016-11-17;167(5):1354-1368.e14.
Publication
released
Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells
Chen L, Ge B, Casale FP, et al.
Cell. 2016-11-17;167(5):1398-1414.

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Showing 7 of 7 results