Search – Common Metabolic Diseases Genome Atlas

Showing 10 of 10 results

Publication
released
Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells
Riccardo Calandrelli, Xingzhao We, John Lalith Charles Richard, et al.
Nat Commun. 2023-10-16;14(1):6519.
Available supplemental data: website
URL: https://data.4dnucleome.org
Data summary: All high-throughput data supporting the current study have been deposited on the 4D Nucleome Data…
Available supplemental data: website
URL: https://github.com/Zhong-Lab-UCSD/RNA3Dgenome-code-repository
Data summary: The codes used for the analysis have been deposited and made publicly available on GitHub at…
Publication
released
Cis-regulatory architecture of human ESC-derived hypothalamic neuron differentiation aids in variant-to-gene mapping of relevant complex traits
Matthew C. Pahl, Claudia A. Doege, Kenyaita M. Hodge, et al.
Nat Commun. 2021-11-19;12(1):6749.
Publication
released
Functional characterization of T2D-associated SNP effects on baseline and ER stress-responsive β cell transcriptional activation
Shubham Khetan, Susan Kales, Romy Kursawe, et al.
Nat Commun. 2021-09-02;12(1):5242.
URL: https://cmdga.org/publications/63f879cd-f426-4495-a12d-103fdac5867c/
URL: https://zenodo.org/record/4974390#.YzHqHi-B39A
Data summary: Linked to Zenodo
Publication
released
Joint disease-specificity at the regulatory base-pair level
Pushpanathan Muthuirulan, Dewei Zhao, Mariel Young, et al.
Nat Commun. 2021-07-06;12(1):4161.
Publication
released
Common schizophrenia risk variants are enriched in open chromatin regions of human glutamatergic neurons
Mads E. Hauberg, Jordi Creus-Muncunill, Jaroslav Bendl, et al.
Nat Commun. 2020-11-04;11(1):5581.
Publication
released
Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D
Ana Viñuela, Arushi Varshney, Martijn van de Bunt, et al.
Nat Commun. 2020-09-30;11(1):4912.
URL: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7528108/
Publication
released
Functional testing of thousands of osteoarthritis-associated variants for regulatory activity
Jason C Klein, Aidan Keith, Sarah J Rice, et al.
Nat Commun. 2019-06-04;10(1):2434.
Publication
released
ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration
Jie Wang, Cristina Zibetti, Peng Shang, et al.
Nat Commun. 2018-04-10;9(1):1364.
Publication
released
Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes
Sílvia Bonàs-Guarch, Marta Guindo-Martínez, Irene Miguel-Escalada, et al.
Nat Commun. 2018-01-22;9(1):321.
Publication
released
Mapping Human Pluripotent-to-Cardiomyocyte Differentiation: Methylomes, Transcriptomes, and Exon DNA Methylation "Memories"
Joshua D Tompkins, Marc Jung, Chang-Yi Chen, et al.
EBioMedicine. 2016-01-19;4:74-85.
URL: https://www.thelancet.com/journals/ebiom/article/PIIS2352-3964(16)30017-2/fulltext