Showing 15 of 15 results

• Publication

  released

  Dynamic chromatin organization and regulatory interactions in human endothelial cell differentiation

  Kris G Alavattam, Katie A Mitzelfelt, Giancarlo Bonora, et al.

  Stem Cell Reports. 2023-01-10;18(1):159-174.

  • doi:10.1016/j.stemcr.2022.11.003
  • PMID:36493778
  • PMCID:PMC9860068

  Available supplemental data: website

  URL: https://data.4dnucleome.org/Alavattam-Mitzelfelt-endothelial-differentiation-chromatin

  Data summary: Data have been deposited in the 4DN data portal and are publicly available at…See more

  Available supplemental data: website

  Data summary: Previously published CM differentiation data are available from GEO: GSE106690 (Bertero et al.,…See more

  Available supplemental data: website

  URL: https://github.com/Noble-Lab/

  Data summary: Source code for analyses performed in this study is available at…See more

• Publication

  released

  Identification and Massively Parallel Characterization of Regulatory Elements Driving Neural Induction

  Fumitaka Inoue, Anat Kreimer, Tal Ashuach, et al.

  Cell Stem Cell. 2019-11-07;25(5):713-727.e10.

  • PMID:31631012
  • PMCID:PMC6850896
  • doi:10.1016/j.stem.2019.09.010

• Publication

  released

  Single-Cell Transcriptome Profiling of Mouse and hESC-Derived Pancreatic Progenitors

  Nicole A J Krentz, Michelle Y Y Lee, Eric E Xu, et al.

  Stem Cell Reports. 2018-12-11;11(6):1551-1564.

  • doi:10.1016/j.stemcr.2018.11.008
  • PMCID:PMC6294286
  • PMID:30540962

• Publication

  released

  Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation

  Clayton E Friedman, Quan Nguyen, Samuel W Lukowski, et al.

  Cell Stem Cell. 2018-10-04;23(4):586-598.e8.

  • doi:10.1016/j.stem.2018.09.009
  • PMID:30290179
  • PMCID:PMC6220122

• Publication

  released

  Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells

  Tahsin Stefan Barakat, Florian Halbritter, Man Zhang, et al.

  Cell Stem Cell. 2018-08-02;23(2):276-288.e8.

  • doi:10.1016/j.stem.2018.06.014
  • PMID:30033119
  • PMCID:PMC6084406

• Publication

  released

  Genes Associated with Pancreas Development and Function Maintain Open Chromatin in iPSCs Generated from Human Pancreatic Beta Cells

  Matthias Thurner, Liraz Shenhav, Agata Wesolowska-Andersen, et al.

  Stem Cell Reports. 2017-11-14;9(5):1395-1405.

  • doi:10.1016/j.stemcr.2017.09.020
  • PMID:29107594

  URL: https://www.sciencedirect.com/science/article/pii/S2213671117304277

• Publication

  released

  iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types

  Athanasia D Panopoulos, Matteo D'Antonio, Paola Benaglio, et al.

  Stem Cell Reports. 2017-04-11;8(4):1086-1100.

  • doi:10.1016/j.stemcr.2017.03.012
  • PMID:28410642
  • PMCID:PMC5390244

• Publication

  released

  Large, Diverse Population Cohorts of hiPSCs and Derived Hepatocyte-like Cells Reveal Functional Genetic Variation at Blood Lipid-Associated Loci

  Evanthia E Pashos, YoSon Park, Xiao Wang, et al.

  Cell Stem Cell. 2017-04-06;20(4):558-570.e10.

  • doi:10.1016/j.stem.2017.03.017
  • PMID:28388432
  • PMCID:PMC5476422

• Publication

  released

  Single-cell Transcriptomes Identify Human Islet Cell Signatures And Reveal Cell-type–specific Expression Changes In Type 2 Diabetes

  Nathan Lawlor, Joshy George, Mohan Bolisetty, et al.

  Genome Research. 2017-02-01;27(2):208-222.

  • doi:10.1101/gr.212720.116
  • PMID:27864352

• Publication

  released

  Prepatterning Of Differentiation-driven Nuclear Lamin A/C-associated Chromatin Domains By GlcNAcylated Histone H2B

  Torunn Rønningen, Akshay Shah, Anja R. Oldenburg, et al.

  Genome Research. 2015-12;25(12):1825-1835.

  • doi:10.1101/gr.193748.115
  • PMID:26359231

• Publication

  released

  Acute TNF-induced Repression Of Cell Identity Genes Is Mediated By NFκB-directed Redistribution Of Cofactors From Super-enhancers

  Søren Fisker Schmidt, Bjørk Ditlev Larsen, Anne Loft, et al.

  Genome Research. 2015-09;25(9):1281-1294.

  • doi:10.1101/gr.188300.114
  • PMID:26113076

• Publication

  released

  Epigenetic Priming Of Enhancers Predicts Developmental Competence Of hESC-derived Endodermal Lineage Intermediates

  Allen Wang, Feng Yue, Yan Li, et al.

  Cell Stem Cell. 2015-04-02;16(4):386-399.

  • doi:10.1016/j.stem.2015.02.013
  • PMID:25842977

• Publication

  released

  Passive and active DNA methylation and the interplay with genetic variation in gene regulation

  Maria Gutierrez-Arcelus, Tuuli Lappalainen, Stephen B Montgomery, et al.

  Elife. 2013-06-04;2:e00523.

  • doi:10.7554/eLife.00523
  • PMID:23755361
  • PMCID:PMC3673336

• Publication

  released

  Dynamic Chromatin Remodeling Mediated by Polycomb Proteins Orchestrates Pancreatic Differentiation of Human Embryonic Stem Cells

  Ruiyu Xie, Logan J. Everett, Hee-Woong Lim, et al.

  Cell Stem Cell. 2013-02-07;12(2):224-237.

  • doi:10.1016/j.stem.2012.11.023
  • PMID:23318056

• Publication

  released

  Genome-wide Analysis Of Histone Modifications In Human Pancreatic Islets

  Reena Bhandare, Jonathan Schug, John Le Lay, et al.

  Genome Research. 2010-04;20(4):428-433.

  • doi:10.1101/gr.102038.109
  • PMID:20181961