Search – Common Metabolic Diseases Genome Atlas

Showing 9 of 9 results

Publication
released
Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
Chongyuan Luo, Hanqing Liu, Fangming Xie, et al.
Cell Genom. 2022-03-09;2(3):100107.
Available supplemental data: website
URL: http://neomorph.salk.edu/Human_cells_snmCT-seq.php
Data summary: Raw and processed data included in this study were deposited to NCBI GEO/SRA with accession number…
Available supplemental data: website
URL: http://neomorph.salk.edu/human_frontal_cortex_ensemble.php
Data summary: snmCAT-seq generated from brain tissues can be visualized at…
Available supplemental data: website
URL: https://assets.nemoarchive.org/dat-s3creyz
Data summary: snRNA-seq data is available for download from the Neuroscience Multi-omics Archive…
Available supplemental data: website
URL: https://github.com/mukamel-lab/SingleCellFusion
Data summary: The code for SingleCellFusion is available from https://github.com/mukamel-lab/SingleCellFusion.
Available supplemental data: website
URL: https://github.com/lhqing/snmCAT-seq_integration
Data summary: The code benchmarking computational integration methods are available from…
Available supplemental data: website
URL: https://github.com/FangmingXie/mctseq_over_under_splitting/blob/master/over-under-splitting-analysis.ipynb
Data summary: The code reproducing the over- and under-splitting analysis are available from…
Available supplemental data: website
URL: https://www.protocols.io/view/snmcat-v1-bwubpesn
Data summary: A detailed bench protocol for snmCAT-seq and future updates to the method can be found at…
Publication
released
Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells
Tahsin Stefan Barakat, Florian Halbritter, Man Zhang, et al.
Cell Stem Cell. 2018-08-02;23(2):276-288.e8.
Publication
released
An eQTL Landscape of Kidney Tissue in Human Nephrotic Syndrome
Christopher E. Gillies, Rosemary Putler, Rajasree Menon, et al.
AJHG. 2018-08-02;103(2):232-244.
- doi:10.1016/j.ajhg.2018.07.004
- PMID:30057032
URL: https://umich.app.box.com/s/6jrvgmdh0ppwqvgriuvijiau0xcb4ohm
Publication
released
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
Javierre BM, Burren OS, Wilder SP, et al.
2016-11-17;167(5):1369-1384.
URL: https://osf.io/u8tzp
Publication
released
β-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance
Boris Novakovic, Ehsan Habibi, Shuang-Yin Wang, et al.
Cell. 2016-11-17;167(5):1354-1368.e14.
Publication
released
Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells
Chen L, Ge B, Casale FP, et al.
Cell. 2016-11-17;167(5):1398-1414.
Publication
released
A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
Anthony D. Schmitt, Ming Hu, Inkyung Jung, et al.
Cell Reports. 2016-11-15;17(8):2042-2059.
- doi:10.1016/j.celrep.2016.10.061
- PMID:27851967
URL: https://www.cell.com/cell-reports/fulltext/S2211-1247(16)31481-4
Publication
released
CD8 + T Cells from Human Neonates Are Biased toward an Innate Immune Response
Ariel O Galindo-Albarrán, Oscar H López-Portales, Darely Y Gutiérrez-Reyna, et al.
Cell Rep. 2016-11-15;17(8):2151-2160.
- doi:10.1016/j.celrep.2016.10.056
- PMID:27851975
Publication
released
Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells
Marco De Simone, Alberto Arrigoni, Grazisa Rossetti, et al.
Immunity. 2016-11-15;45(5):1135-1147.

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Showing 9 of 9 results