Search – Common Metabolic Diseases Genome Atlas

Showing 19 of 19 results

Publication
released
Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex
Ana Uzquiano, Amanda J Kedaigle, Martina Pigoni, et al.
Cell. 2022-09-29;185(20):3770-3788.e27.
Available supplemental data: website
URL: https://www.synapse.org
Data summary: Read-level data from scRNA-seq, scATAC-seq, SHARE-seq, and Slide-seq data, supporting the findings…
Available supplemental data: website
URL: https://singlecell.broadinstitute.org/single_cell/study/SCP1756
Data summary: The count-level data and meta-data have been deposited at the Single Cell Portal.
Available supplemental data: website
URL: https://doi.org/10.17632/7cxccpv4hg.1
Data summary: Supplemental data related to Figures 1, ,3,3, ,4,4, ,5,5, ,6,6, and and77 has been deposited…
Available supplemental data: website
URL: https://github.com/AmandaKedaigle/OrganoidAtlas
Data summary: Code used during data analysis is available at GitHub. d Any additional information required to…
Available supplemental data: website
URL: http://solo.bmap.ucla.edu/shiny/webapp/
Data summary: Data from previous publications that was used in this study can be found at the Gene Expression…
Publication
released
Non-cell-autonomous disruption of nuclear architecture as a potential cause of COVID-19-induced anosmia
Marianna Zazhytska, Albana Kodra, Daisy A Hoagland, et al.
Cell. 2022-03-17;185(6):1052-1064.e12.
Available supplemental data: website
URL: https://doi.org/10.1101/2021.02.09.430314
Data summary: Human and hamster RNAseq, scRNAseq, in situ HiC, supplemental spreadsheets and detailed…
Data summary: This study did not generate custom computer code. Any additional information is available from…
Publication
released
Landscape of stimulation-responsive chromatin across diverse human immune cells
Diego Calderon, Michelle L. T. Nguyen, Anja Mezger, et al.
Nature Genetics. 2019-9-30;51:1494–1505.
Publication
released
Chromatin activity at GWAS loci identifies T cell states driving complex immune diseases
Blagoje Soskic, Eddie Cano-Gamez, Deborah J. Smyth, et al.
Nature Genetics. 2019-9-23;51:1486–1493.
Publication
released
The impact of proinflammatory cytokines on the β-cell regulatory landscape provides insights into the genetics of type 1 diabetes
Mireia Ramos-Rodríguez, Helena Raurell-Vila, Maikel L. Colli, et al.
Nature Genetics. 2019-11-01;51:1588–1595.
- doi:10.1038/s41588-019-0524-6
- PMID:31676868
Publication
released
Human Pancreatic Islet Three-dimensional Chromatin Architecture Provides Insights into The Genetics of Type 2 Diabetes
Irene Miguel-Escalada, Silvia Bonàs-Guarch, Inês Cebola, et al.
Nature Genetics. 2019-06-28;51:1137-1148.
- doi:10.1038/s41588-019-0457-0
- PMID:31253982
URL: https://www.nature.com/articles/s41588-019-0457-0
Publication
released
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization
Elizabeth H Finn, Gianluca Pegoraro, Hugo B Brandão, et al.
Cell. 2019-03-07;176(6):1502-1515.e10.
Data summary: The Hi-C data has been deposited in GEO under ID code GSE107051, and in the 4D Nucleome data…
Publication
released
Retinal transcriptome and eQTL analyses identify genes associated with age-related macular degeneration
Rinki Ratnapriya, Olukayode A. Sosina, Margaret R. Starostik, et al.
Nature Genetics. 2019-02-11;51:606–610.
- doi:10.1038/s41588-019-0351-9
- PMID:30742112
Publication
released
Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs
Monique G P van der Wijst, Harm Brugge, Dylan H de Vries, et al.
Nature Genetics. 2018-4-2;50:493–497.
Publication
released
Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression
Benjamin J Schmiedel, Divya Singh, Ariel Madrigal, et al.
Cell. 2018-11-29;175(6):1701-1715.e16.
Publication
released
Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns
Martin Enge, H. Efsun Arda, Marco Mignardi, et al.
Cell. 2017-10-05;171(2):321-330.
- doi:10.1016/j.cell.2017.09.004
- PMID:28965763
Publication
released
Type 2 Diabetes Variants Disrupt Function of SLC16A11 through Two Distinct Mechanisms
Victor Rusu, Eitan Hoch, Josep M Mercader, et al.
Cell. 2017-06-29;170(1):199-212.e20.
Publication
released
β-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance
Boris Novakovic, Ehsan Habibi, Shuang-Yin Wang, et al.
Cell. 2016-11-17;167(5):1354-1368.e14.
Publication
released
Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells
Chen L, Ge B, Casale FP, et al.
Cell. 2016-11-17;167(5):1398-1414.
Publication
released
Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens
Yohann Nédélec, Joaquín Sanz, Golshid Baharian, et al.
Cell. 2016-10-20;167(3):657-669.e21.
- doi:10.1016/j.cell.2016.09.025
- PMID:27768889
Publication
released
Genetic Variation Determines PPARγ Function and Anti-diabetic Drug Response In Vivo
Raymond E. Soccio, Eric R. Chen, Satyajit R. Rajapurkar, et al.
Cell. 2015-07-02;162(1):33-44.
- doi:10.1016/j.cell.2015.06.025
- PMID:26140591
Publication
released
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S.P. Rao, Miriam H. Huntley, Neva C. Durand, et al.
Cell. 2014-12-18;159(7):1665-1680.
- doi:10.1016/j.cell.2014.11.021
- PMID:25497547
URL: https://www.cell.com/cell/fulltext/S0092-8674(14)01497-4
Publication
released
Pancreatic Islet Enhancer Clusters Enriched In Type 2 Diabetes Risk–associated Variants
Lorenzo Pasquali, Kyle J. Gaulton, Santiago A. Rodríguez-Seguí, et al.
Nature Genetics. 2014-02;46(2):136-143.
- doi:10.1038/ng.2870
- PMID:24413736
Publication
released
Comparative Epigenomic Analysis Of Murine And Human Adipogenesis
Tarjei S. Mikkelsen, Zhao Xu, Xiaolan Zhang, et al.
Cell. 2010-10-01;143(1):156-169.
- doi:10.1016/j.cell.2010.09.006
- PMID:20887899

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Showing 19 of 19 results