makeCandidateRegions.py
- Status: released
- Title
- makeCandidateRegions.py
- Description
- makeCandidateRegions.py will take as input the narrowPeak file produced by MACS2 and then perform the following processing steps: 1. Count DNase-seq reads in each peak and retain the top N peaks with the most read counts 2. Resize each of these N peaks to be a fixed number of base pairs centered on the peak summit 3. Remove any regions listed in the 'blocklist' and include any regions listed in the 'includelist' 4. Merge any overlapping regions
Software Versions
| Version | Download checksum |
|---|---|
| 0.2.2 |