run.neighborhoods.py
- Status: released
- Title
- run.neighborhoods.py
- Description
- ```run.neighborhoods.py``` will count DNase-seq (or ATAC-seq) and H3K27ac ChIP-seq reads in candidate enhancer regions. It also makes GeneList.txt, which counts reads in gene bodies and promoter regions. Replicate epigenetic experiments should be included as comma delimited list of files. Read counts in replicate experiments will be averaged when computing enhancer Activity.
Software Versions
| Version | Download checksum |
|---|---|
| v0.2.2 |