Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema
Clear Filters
Assay
  • 1ATAC-seq
Pipeline status
  • 1active
Pipeline groups
  • 1Peak Alignment Pipeline
Software
  • 2BEDTools
  • 2MACS2
  • 1Association testing and fine mapping: eQTL-Catalogue/qtlmap
  • 1Bowtie 2
  • 1CoLo
  • 1Gene expression QC and normalisation: eQTL-Catalogue/qcnorm
  • 1Genotype QC and imputation: eQTL-Catalogue/genimpute
  • 1Peak alignment
  • 1RNA-seq quantification: eQTL-Catalogue/rnaseq
  • 1SRA_Toolkit
  • 1Samtools
  • 1bedGraphToBigWig
  • 1getVariantOverlap.py
  • 1makeCandidateRegions.py
  • 1predict.py
  • 1run.neighborhoods.py
  • 1unknown
Developed by
  • 1Kyle Gaulton, UCSD

Showing 1 of 1 results

table-tab-iconmatrix-icon

  • Pipeline

    DPL857456

    active

    Peak Alignment Pipeline
    Assays: ATAC-seq
    Software: Peak alignment
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego