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Schema
Citing CMDGA
Clear Filters
Annotation type
840
histone modifications
837
candidate regulatory elements
809
binding sites
177
gene expression
11
accessible chromatin
7
caQTL
3
eQTL
3
variant allelic effects
1
representative DNase hypersensitivity sites
0
meQTL
Annotation Category
3
Genetic variant effects
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
cell line
1
primary cell
Biosample term
2
MIN6
1
naive t cell
Date released
79
May, 2020
53
February, 2024
3
May, 2021
3
October, 2022
0
February, 2021
Software used
2
mpraflow
1
deseq2
Lab
3
AMP-T2D consortium
Kyle Gaulton, UCSD
Project
3
AMP
RFA
3
AMP
lab.title!
Kyle Gaulton, UCSD
Showing 3 of 3 results
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FileSet
DSR308TXA
released
Annotation file set
: Variant allelic effects annotation from MPRA to prioritize disease-associated variants for five autoimmune diseases.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP