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Annotation type
643
binding sites
584
histone modifications
399
target gene predictions
327
candidate regulatory elements
191
chromatin state
163
accessible chromatin
21
gene expression
10
differential activity
10
eQTL
4
variant allelic effects
Annotation Category
4
Genetic variant effects
Annotation type Category
1
ATAC-seq
1
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
81
primary cell
49
tissue
6
in vitro differentiated cells
4
cell line
Biosample term
2
MIN6
1
EndoC_BH1
1
glomerular visceral epithelial cell
Organ
2
epithelium
1
kidney
1
pancreas
Date released
2
May, 2020
2
October, 2022
Software used
2
deltasvm
2
mpraflow
Lab
4
AMP-T2D consortium
Project
4
AMP
Collection Tags
2
CMDGA
2
DGA
RFA
4
AMP
Showing 4 of 4 results
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FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR372RJW
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney podocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP