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Citing CMDGA
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Annotation type
1347
target gene predictions
930
chromatin state
900
accessible chromatin
828
candidate regulatory elements
505
gene expression
167
differential activity
167
eQTL
137
histone modifications
99
binding sites
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant allelic effects
4
variant to gene
3
meQTL
3
other
3
pQTL
Annotation Category
4
Genetic variant effects
Annotation type Category
1
SNP-SELEX
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
3
Homo sapiens
Biosample type
2
cell line
1
primary cell
Biosample term
2
MIN6
1
naive t cell
1
purified protein and synthetic DNA oligo binding assay
Date released
3
October, 2022
1
February, 2023
Software used
deltasvm
2
mpraflow
1
betacells_cytokines_t1d
1
deseq2
Lab
3
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
3
AMP
1
T1D
RFA
3
AMP
1
T1D
month_released!
April, 2019
February, 2021
organ_slims!
spleen
software_used.software.name!
deltasvm
Showing 4 of 4 results
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FileSet
DSR308TXA
released
Annotation file set
: Variant allelic effects annotation from MPRA to prioritize disease-associated variants for five autoimmune diseases.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D