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Assay category
5
DNA accessibility
2
Transcription
Assay
13
ChIP-seq
7
total RNA-seq
5
ATAC-seq
4
WGBS
2
single cell RNA-seq
Project
5
AMP
2
HPAP
RFA
5
AMP
2
HPAP
Experiment status
7
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
Organ
7
epithelium
7
pancreas
Life stage
adult
5
child
2
unknown
1
newborn
Available data
5
bam
5
bigWig
5
fastq
3
bed narrowPeak
3
bigBed narrowPeak
2
tsv
2
zippedFastqFolder
Platform
3
Illumina NextSeq 500
2
HiSeq HighOutput V4
1
Illumina HiSeq 2000
1
Illumina HiSeq 2500
Run type
6
paired-ended
1
single-ended
Read length (nt)
4
50
2
41
1
75
1
100
1
102
Library insert size (nt)
1
>100
Library made from
5
DNA
2
RNA
Date released
2
May, 2022
2
September, 2017
1
April, 2018
1
July, 2018
1
September, 2018
Lab
5
AMP-T2D consortium
2
Klaus Kaestner, Upenn
Replication type
5
unreplicated
2
anisogenic
organ_slims!
skeleton
replicates.library.biosample.life_stage!
adult
Showing 7 of 7 results
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Experiment
DSR826QVG
released
ATAC-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (13 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR529JQL
released
ATAC-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (3 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
TSTSR351IAS
released
ATAC-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (17 months)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR028950
released
single cell RNA-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (5 years) and male newborn (1 month)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR339950
released
single cell RNA-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female child (19 months) and male child (2 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR794793
released
ATAC-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR855058
released
ATAC-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell
Lab:
AMP-T2D consortium
Project:
AMP