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Citing CMDGA
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Annotation type
3
eQTL
2
variant allelic effects
Annotation Category
5
Genetic variant effects
Annotation type Category
3
RNA-seq
Available data
2
bed bed3+
File set status
5
released
Genome assembly (visualization)
3
hg18
2
hg19
Organism
5
Homo sapiens
Biosample type
3
tissue
2
cell line
Biosample term
2
MIN6
1
liver
1
omental fat pad
1
subcutaneous adipose tissue
Organ
2
adipose tissue
2
connective tissue
1
liver
Life stage
3
adult
Date released
3
August, 2021
2
October, 2022
Software used
2386
r
2052
macs
838
encode-ccres
166
chromhmm
139
abc
136
deltasvm
122
deseq2
32
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
18
samtools
15
limix
14
hiccups
14
qTLtools
12
deeptools
12
matrix-eQTL
12
umitools
8
fastqtl
6
eigenmt
6
rasqual
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
probabel
1
snap
1
spp
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
assembly!
GRCh38
Showing 5 of 5 results
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Download
FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR397GGI
released
Annotation file set
: eQTLS in different tissues: subcutaneous fat (609 samples)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR767ENC
released
Annotation file set
: eQTLS in different tissues: omental fat (741 samples)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR606JYM
released
Annotation file set
: eQTLS in different tissues: liver (960 samples)
Lab:
AMP-T2D consortium
Project:
AMP