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Schema
Citing CMDGA
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Embeddings type
2
Accessible chromatin
1
Gene expression
Cohort
1
HPAP
Embeddings Category
3
umap
Underlying Assay
1
10X scATAC-seq
1
10X scRNA-seq
1
sciATAC-seq
Available data
2
h5ad
1
rds
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
islet of Langerhans
1
pancreas
Tissue term
3
pancreas
Organ
5
pancreas
blood
2
bodily fluid
Date released
1
February, 2021
1
March, 2023
1
March, 2024
Software used
1
r
Lab
32
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Xin Sun, UCSD
1
Bing Ren, UCSD
Project
3
AMP
RFA
3
AMP
assembly!
hg19
biosample_term_name!
uterus
organ_slims!
blood
Showing 3 of 3 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP