Showing 25 of 43648 results

• Publication

  released

  Variant-to-function analysis of the childhood obesity chr12q13 locus implicates rs7132908 as a causal variant within the 3' UTR of FAIM2

  Sheridan H Littleton, Khanh B Trang, Christina M Volpe, et al.

  Cell Genomics. 2024-05-08;

  • doi:10.1101/2023.08.21.553157
  • PMID:37662342
  • PMCID:PMC10473629

  Data summary: Hi-C, RNA-seq, ATAC-seq, single-nucleus RNA-seq, and single-nucleus ATAC-seq data have been…See more

  URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241592

  Data summary: Raw and processed Hi-C data GEO: GSE241592

  URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241050

  Data summary: Raw and processed RNA-seq data GEO: GSE241050

  URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241591

  Data summary: Raw and processed ATAC-seq data GEO: GSE241591

  URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241594

  Data summary: Raw and processed single-nucleus RNA-seq data GEO: GSE241594

  URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241593

  Data summary: Raw and processed single-nucleus ATAC-seq data GEO: GSE241593;

• Publication

  released

  Human skeletal muscle aging atlas

  Veronika R. Kedlian, Yaning Wang, Tianliang Liu, et al.

  Nature Aging. 2024-04-15;

  • PMID:38622407
  • doi:10.1038/s43587-024-00613-3

  URL: https://www.muscleageingcellatlas.org

  Data summary: The processed data objects generated within this study are available for browsing

  URL: https://doi.org/10.7272/Q65X273X

  Data summary: Raw sequencing data for the newly generated libraries have been deposited to ArrayExpress…See more

  Data summary: Mouse datasets were obtained from GSE110878, GSE138707, GSE134540, GSE143476, GSE149590 and…See more

  Data summary: All other data supporting the findings of this study are available from the corresponding authors…See more

  URL: https://github.com/Teichlab/SKM_ageing_atlas

  Data summary: Code availability: All custom notebooks and scripts used in this study have been deposited to

• Publication

  released

  Multimodal cell atlas of the ageing human skeletal muscle

  Yiwei Lai, Ignacio Ramírez-Pardo, Joan Isern, et al.

  Nature. 2024-04-22;

  • PMID:38649488
  • doi:10.1038/s41586-024-07348-6

  Data summary: All raw data have been deposited to CNGB Nucleotide Sequence Archive (CNP0004394, CNP0004395,…See more

  URL: https://db.cngb.org/cdcp/hlma/

  Data summary: All processed data are available at the Human Muscle Ageing Cell Atlas database.

  URL: https://github.com/MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software

  Data summary: All data were analysed using standard programs and packages, as described in the Methods. Custom…See more

  URL: https://github.com/123anjuan/HMA

  Data summary: Analysis of the generated data82.

• Publication

  released

  Response eQTLs, chromatin accessibility, and 3D chromatin structure in chondrocytes provide mechanistic insight into osteoarthritis risk

  Nicole E Kramer, Philip Coryell, Susan D'Costa, et al.

  bioRvix. 2024-05-05;

  • doi:10.1101/2024.05.05.592567

• FileSet

  DSR602VGF

  released

  Annotation file set: eQTL of primary articular chondrocytes treated with fibronectin fragment (FN-f) from 101 donors

  Lab: Doug Phanstiel, UNC

  Project: community

• FileSet

  DSR932ZJL

  released

  Annotation file set: eQTL of primary articular chondrocytes treated with PBS from 101 donors

  Lab: Doug Phanstiel, UNC

  Project: community

• Publication

  released

  Primary osteoarthritis chondrocyte map of chromatin conformation reveals novel candidate effector genes

  Norbert Bittner, Chenfu Shi, Danyun Zhao, et al.

  Ann Rheum Dis. 2024-03-13;:ard-2023-224945.

  • PMID:38479789
  • doi:10.1136/ard-2023-224945

• FileSet

  DSR543LWM

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Whole Blood.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR851YIE

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Vagina.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR606YST

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Uterus.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR125GEF

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Thyroid.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR562FVN

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Testis.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR007TCR

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Stomach.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR747USS

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Spleen.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR115KNL

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Small Intestine - Terminal Ileum.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR956YKF

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Skin - Sun Exposed (Lower leg).

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR738ZFY

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Skin - Not Sun Exposed (Suprapubic).

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR617MMD

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Prostate.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR187OSP

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Pituitary.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR029CFN

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Ovary.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR762HGG

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Minor Salivary Gland.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR315SRJ

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Lung.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR200YVF

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Kidney - Medulla.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR168NLD

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Kidney - Cortex.

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR394TGZ

  released

  Annotation file set: Gene expression summary from GTEx V8 - Gene TPMs for Fallopian Tube.

  Lab: AMP-T2D consortium

  Project: AMP