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Publication
released
A comparative atlas of single-cell chromatin accessibility in the human brain
Yang Eric Li, Sebastian Preissl, Michael Miller, et al.
Science. 2023-10-13;382(6667)
Publication
released
Increased body mass index is linked to systemic inflammation through altered chromatin co-accessibility in human preadipocytes
Kristina M. Garske, Asha Kar, Caroline Comenho, et al.
Nat Commun. 2023-07-14;14(1):4214.
Publication
released
Three-dimensional chromatin organization in cardiac development and disease
Alessandro Bertero, Manuel Rosa-Garrido.
J Mol Cell Cardiol. 2020-11-24;151:89-105.
Publication
released
Lineage-specific differences and regulatory networks governing human chondrocyte development
Daniel Richard, Steven Pregizer, Divya Venkatasubramanian, et al.
Elife. 2023-03-15;15:12:e79925
Software
released
dreamlet — source
A open-source R package dreamlet (DiseaseNeurogenomics.github.io/dreamlet) uses a pseudobulk approach based on precision-weighted linear mixed models to identify genes differentially expressed with traits across subjects for each cell cluster.
Software type: other
Software
released
Scanpy — source
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing.
Software
released
scE2G — source
A new family of classification models, scE2G, to predict enhancer-gene regulation.
Software type: other
Software
released
ArchR — source
ArchR is a full-featured R package for processing and analyzing single-cell ATAC-seq data. ArchR provides the most extensive suite of scATAC-seq analysis tools of any software available.
Software type: other
FileSet
DSR485442
released
Annotation file set: The dataset contains differentially accessible cCREs between CAD and control in human visceral fat, derived from STARNET ATAC-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR102339
released
Annotation file set: The dataset contains differentially accessible cCREs between CAD and control in human skeletal muscle, derived from STARNET ATAC-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR241218
released
Annotation file set: The dataset contains differentially accessible cCREs between CAD and control in human liver, derived from STARNET ATAC-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR936629
released
Annotation file set: The dataset contains differentially accessible cCREs between CAD and control in human artery, derived from STARNET ATAC-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR352861
released
Annotation file set: The dataset contains differentially expressed genes between CAD and control in human visceral fat, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR553091
released
Annotation file set: The dataset contains differentially expressed genes between CAD and control in human skeletal muscle, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR505915
released
Annotation file set: The dataset contains differentially expressed genes between CAD and control in human liver, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR849587
released
Annotation file set: The dataset contains differentially expressed genes between CAD and control in human artery, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR546806
released
Annotation file set: The dataset contains gene expression levels in human visceral fat, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR442078
released
Annotation file set: The dataset contains gene expression levels in human skeletal muscle, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR218017
released
Annotation file set: The dataset contains gene expression levels in human liver, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR007425
released
Annotation file set: The dataset contains gene expression levels in human artery, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR611486
released
Annotation file set: The dataset contains cCRE–target gene links in human visceral fat, predicted from STARNET ATAC-seq data with detailed annotation (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR215161
released
Annotation file set: The dataset contains cCRE–target gene links in human skeletal muscle, predicted from STARNET ATAC-seq data with detailed annotation (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR474569
released
Annotation file set: The dataset contains cCRE–target gene links in human liver, predicted from STARNET ATAC-seq data with detailed annotation (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR668686
released
Annotation file set: The dataset contains cCRE–target gene links in human artery, predicted from STARNET ATAC-seq data with detailed annotation (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR388902
released
Annotation file set: The dataset contains candidate cis-regulatory elements (cCREs) in human visceral fat, derived from STARNET ATAC-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP

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Showing 25 of 46422 results