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Schema
Citing CMDGA
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Embeddings type
2
Accessible chromatin
2
Gene expression
Embeddings Category
4
umap
Underlying Assay
28
10X scRNA-seq
Smart-seq
2
10X snATAC-seq
10X snRNA-seq
Available data
3
h5ad
2
mtx
2
tsv
1
bed bed3
1
cloupe
1
rds
1
tbi
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
1
carotid canal
1
immune system
1
kidney
1
skeletal muscle tissue
Tissue term
1
carotid canal
1
kidney
1
leukocyte
1
skeletal muscle tissue
Organ
pancreas
1
bone element
1
kidney
1
musculature of body
Life stage
2
adult
Date released
3
May, 2022
1
September, 2023
Software used
1
cellranger-atac
Lab
4
AMP-T2D consortium
Project
4
AMP
1
ENCODE
1
LungMap
RFA
4
AMP
embeddings_underlying_assay!
10X snRNA-seq
Smart-seq
organ_slims!
heart
pancreas
Showing 4 of 4 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR996NUW
released
Embeddings file set
: The human cell atlas of all immune cells from 24 organs of 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP