Search – Common Metabolic Diseases Genome Atlas

Showing 9 of 9 results

FileSet
DSR291812
released
Embeddings file set: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab: Stephen Parker, UMich
Project: AMP
FileSet
DSR144369
released
Embeddings file set: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab: Stephen Parker, UMich
Project: AMP
FileSet
DSR445357
released
Embeddings file set: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR827MAZ
released
Embeddings file set: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR772NPS
released
Embeddings file set: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR692HQS
released
Embeddings file set: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR549TWY
released
Embeddings file set: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR758NPF
released
Embeddings file set: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR322WJB
released
Embeddings file set: Islet snATAC-seq from control samples
Lab: Kyle Gaulton, UCSD
Project: AMP