Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Embeddings type
Gene expression
5
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
5
umap
Underlying Assay
3
10X snATAC-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
3
h5ad
2
mtx
2
tsv
1
bed bed3
1
cloupe
1
rds
1
tbi
File set status
5
released
Genome assembly (visualization)
1
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
2
islet of Langerhans
1
carotid canal
1
lung
1
skeletal muscle tissue
Tissue term
2
pancreas
1
carotid canal
1
lung
1
skeletal muscle tissue
Organ
3
pancreas
blood
1
bodily fluid
1
bone element
1
lung
1
musculature of body
Date released
2
May, 2022
1
February, 2021
1
March, 2024
1
September, 2021
Software used
1
cellranger-atac
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
4
AMP
1
LungMap
RFA
4
AMP
1
LungMap2
award.rfa!
ENCODE3
embeddings_type!
Gene expression
organ_slims!
blood
Showing 5 of 5 results
table-tab-icon
matrix-icon
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP