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Citing CMDGA
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Embeddings type
2
Accessible chromatin
Gene expression
Embeddings Category
2
umap
Underlying Assay
1
10X snATAC-seq
1
sciATAC-seq
Available data
2
mtx
2
tsv
1
bed bed3
1
cloupe
1
h5ad
1
tbi
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
1
carotid canal
skeletal muscle tissue
1
tissues
Tissue term
pancreas
1
blood
1
carotid canal
1
tissues
Organ
1
bone element
Date released
1
May, 2022
1
November, 2021
Software used
1
cellranger-atac
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
LungMap2
award.rfa!
LungMap2
biosample_term_name!
skeletal muscle tissue
embeddings_type!
Gene expression
embeddings_underlying_assay!
10X scRNA-seq
tissue_term_name!
pancreas
Showing 2 of 2 results
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FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE