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Embeddings type
8
Accessible chromatin
Embeddings Category
8
umap
Underlying Assay
39
10X scRNA-seq
28
Smart-seq
8
10X snATAC-seq
5
10X snRNA-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
6
h5ad
6
tsv
3
mtx
1
bed bed3
1
cloupe
1
tbi
File set status
8
released
Genome assembly (visualization)
1
hg19
Organism
7
Homo sapiens
Biosample type
8
tissue
1
primary cell
Biosample term
2
islet of Langerhans
1
artery
1
carotid canal
1
liver
1
pancreas
1
peripheral blood mononuclear cell
1
skeletal muscle
1
skeletal muscle tissue
1
subcutaneous adipose tissue
Tissue term
2
pancreas
2
skeletal muscle tissue
1
adipose
1
artery
1
blood
1
carotid canal
1
liver
Organ
2
musculature of body
2
pancreas
1
adipose tissue
1
artery
1
blood
1
blood vessel
1
bodily fluid
1
bone element
1
connective tissue
1
liver
1
vasculature
Life stage
4
adult
Date released
4
April, 2025
2
May, 2022
1
August, 2021
1
October, 2024
Software used
1
cellranger-atac
Lab
6
AMP-T2D consortium
1
Franck Mauvais-Jarvis Lab
1
Kyle Gaulton, UCSD
Project
6
AMP
1
T1D
1
community
RFA
6
AMP
LungMap2
1
T1D
1
community
award.rfa!
LungMap2
Showing 8 of 8 results
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FileSet
DSR186384
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR547861
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR856740
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR940154
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D