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Schema
Citing CMDGA
Clear Filters
Embeddings type
4
Gene expression
2
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
6
umap
Underlying Assay
2
10X scRNA-seq
2
10X snRNA-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
5
h5ad
2
rds
1
mtx
1
tsv
File set status
6
released
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
2
heart
2
islet of Langerhans
1
kidney
1
pancreas
Tissue term
3
pancreas
2
heart
1
kidney
Organ
3
pancreas
1
heart
1
kidney
Life stage
2
adult
Date released
May, 2022
1
February, 2021
1
February, 2023
1
March, 2023
1
March, 2024
1
September, 2020
1
September, 2023
Software used
1
r
Lab
3
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Project
6
AMP
RFA
6
AMP
2
LungMap2
2
T1D
1
ENCODE3
month_released!
May, 2022
organ_slims!
tongue
tissue_term_name!
vasculature
Showing 6 of 6 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP