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Citing CMDGA
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Embeddings type
Accessible chromatin
3
Gene expression
Embeddings Category
3
umap
Underlying Assay
2
10X scRNA-seq
1
10X snRNA-seq
Available data
3
h5ad
File set status
3
released
Organism
2
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
2
pancreas
1
islet of Langerhans
1
lung
1
peripheral blood mononuclear cell
Tissue term
2
pancreas
1
blood
1
lung
Organ
2
pancreas
1
blood
1
bodily fluid
1
lung
Date released
1
August, 2021
1
March, 2023
1
September, 2021
Software used
1
r
Lab
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
1
AMP
1
LungMap
1
T1D
RFA
1
AMP
1
LungMap2
1
T1D
biosample_term_name!
epithelial cell
embeddings_type!
Accessible chromatin
lab.title!
AMP-T2D consortium
organ_slims!
intestine
Showing 3 of 3 results
table-tab-icon
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D