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Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
2
MIN6
Date released
2
October, 2022
Software used
2509
macs
1515
r
773
encode-ccres
242
abc
125
chromhmm
117
deltasvm
32
cicero
27
chicago
26
nospecificsoft_customcode
14
hiccups
11
rasqual
7
deseq2
6
eigenmt
6
limix
6
matrix-eQTL
6
samtools
5
qTLtools
2
combined S2G strategy
2
minfi
2
mpraflow
1
bedops
1
betacells_cytokines_t1d
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
fastqtl
1
peer
1
pepatac
1
probabel
1
spp
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
fibroblast of dermis
organ_slims!
lung
nerve
Showing 2 of 2 results
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FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP