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Citing CMDGA
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Embeddings type
5
Gene expression
Accessible chromatin
Embeddings Category
5
umap
Underlying Assay
29
10X scRNA-seq
Smart-seq
2
10X snRNA-seq
Available data
5
h5ad
1
mtx
1
rds
1
tsv
File set status
5
released
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
heart
2
pancreas
1
immune system
islet of Langerhans
1
kidney
1
lung
1
peripheral blood mononuclear cell
1
skeletal muscle tissue
Tissue term
1
kidney
1
leukocyte
1
lung
1
pancreas
1
skeletal muscle tissue
Organ
1
kidney
1
lung
1
musculature of body
1
pancreas
Life stage
2
adult
Date released
2
May, 2022
1
March, 2023
1
September, 2021
1
September, 2023
Software used
1
r
Lab
3
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
4
AMP
1
LungMap
RFA
4
AMP
1
LungMap2
biosample_term_name!
heart
islet of Langerhans
embeddings_type!
Accessible chromatin
embeddings_underlying_assay!
Smart-seq
organ_slims!
trachea
Showing 5 of 5 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR996NUW
released
Embeddings file set
: The human cell atlas of all immune cells from 24 organs of 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap