Search – Common Metabolic Diseases Genome Atlas

Showing 11 of 11 results

FileSet
DSR291812
released
Embeddings file set: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab: Stephen Parker, UMich
Project: AMP
FileSet
DSR144369
released
Embeddings file set: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab: Stephen Parker, UMich
Project: AMP
FileSet
DSR445357
released
Embeddings file set: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR549TWY
released
Embeddings file set: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR493VFJ
released
Embeddings file set: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR384UWH
released
Embeddings file set: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR132DPW
released
Embeddings file set: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR838CLG
released
Embeddings file set: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab: Bing Ren, UCSD
Project: ENCODE
FileSet
DSR758NPF
released
Embeddings file set: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR514DTZ
released
Embeddings file set: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab: Xin Sun, UCSD
Project: LungMap
FileSet
DSR722OVR
released
Embeddings file set: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab: Xin Sun, UCSD
Project: LungMap