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Schema
Citing CMDGA
Clear Filters
Embeddings type
2
Accessible chromatin
2
Gene expression
Cohort
1
HPAP
Embeddings Category
4
umap
Underlying Assay
2
10X scRNA-seq
1
10X scATAC-seq
1
10X snATAC-seq
sciATAC-seq
Available data
3
h5ad
1
rds
File set status
4
released
Organism
3
Homo sapiens
Biosample type
4
tissue
2
primary cell
Biosample term
3
islet of Langerhans
3
pancreas
2
peripheral blood mononuclear cell
Tissue term
4
pancreas
2
blood
Organ
4
pancreas
2
blood
2
bodily fluid
Date released
2
August, 2021
1
March, 2023
1
March, 2024
Software used
1
r
Lab
32
AMP-T2D consortium
4
Kyle Gaulton, UCSD
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
biosample_term_name!
lung
embeddings_underlying_assay!
sciATAC-seq
software_used.software.name!
cellranger-atac
tissue_term_name!
cell
Showing 4 of 4 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D