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Citing CMDGA
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Embeddings type
3
Accessible chromatin
2
Gene expression
Embeddings Category
5
umap
Underlying Assay
2
10X snATAC-seq
10X scATAC-seq
1
10X scRNA-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
5
h5ad
File set status
5
released
Organism
5
Homo sapiens
Biosample type
5
tissue
1
primary cell
Biosample term
2
islet of Langerhans
2
lung
2
pancreas
1
peripheral blood mononuclear cell
Tissue term
3
pancreas
2
lung
1
blood
Organ
3
pancreas
2
lung
1
blood
1
bodily fluid
Date released
2
September, 2021
1
August, 2021
1
February, 2021
1
March, 2023
Software used
1
r
Lab
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Xin Sun, UCSD
Project
2
AMP
2
LungMap
1
T1D
RFA
2
AMP
2
LungMap2
1
T1D
biosample_term_name!
muscle organ
embeddings_underlying_assay!
10X scATAC-seq
lab.title!
AMP-T2D consortium
Showing 5 of 5 results
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D