Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Embeddings type
3
Accessible chromatin
2
Gene expression
Embeddings Category
5
umap
Underlying Assay
2
10X snATAC-seq
2
10X snRNA-seq
1
sciATAC-seq
Available data
33
h5ad
5
mtx
5
tsv
1
bed bed3
1
cloupe
1
rds
1
tbi
File set status
5
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
2
skeletal muscle tissue
1
carotid canal
1
heart
1
tissues
Tissue term
2
skeletal muscle tissue
1
carotid canal
1
heart
1
tissues
Organ
2
musculature of body
1
bone element
1
heart
Life stage
1
adult
Date released
3
May, 2022
1
February, 2023
1
November, 2021
Software used
1
cellranger-atac
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
biosample_term_name!
muscle organ
tissue_term_name!
epithelial cell
mammary gland
pancreas
Showing 5 of 5 results
table-tab-icon
matrix-icon
FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE