Search – Common Metabolic Diseases Genome Atlas

Showing 13 of 13 results

FileSet
DSR445357
released
Embeddings file set: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR662TAR
released
Embeddings file set: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab: Franck Mauvais-Jarvis Lab
Project: community
FileSet
DSR827MAZ
released
Embeddings file set: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR549TWY
released
Embeddings file set: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR493VFJ
released
Embeddings file set: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR384UWH
released
Embeddings file set: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR132DPW
released
Embeddings file set: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR838CLG
released
Embeddings file set: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab: Bing Ren, UCSD
Project: ENCODE
FileSet
DSR758NPF
released
Embeddings file set: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR514DTZ
released
Embeddings file set: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab: Xin Sun, UCSD
Project: LungMap
FileSet
DSR722OVR
released
Embeddings file set: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab: Xin Sun, UCSD
Project: LungMap
FileSet
DSR322WJB
released
Embeddings file set: Islet snATAC-seq from control samples
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR047LET
released
Embeddings file set: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab: Kyle Gaulton, UCSD
Project: T1D