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Clear Filters
Embeddings type
  • 6Accessible chromatin
  • 1Gene expression
Embeddings Category
  • 7umap
Underlying Assay
  • 510X snATAC-seq
  • 110X snRNA-seq
  • 1sciATAC-seq
Available data
  • 47h5ad
  • 13rds
  • 7tsv
  • 5mtx
  • 1bed bed3
  • 1cloupe
  • 1tbi
File set status
  • 7released
Genome assembly (visualization)
  • 1hg19
Organism
  • 6Homo sapiens
Biosample type
  • 6tissue
Biosample term
  • skeletal muscle tissue
  • 1artery
  • 1carotid canal
  • 1heart
  • 1liver
  • 1skeletal muscle
  • 1subcutaneous adipose tissue
  • 1tissues
Tissue term
  • 1adipose
  • 1artery
  • 1carotid canal
  • 1heart
  • 1liver
  • 1skeletal muscle tissue
  • 1tissues
Organ
  • 1adipose tissue
  • 1artery
  • 1blood vessel
  • 1bone element
  • 1connective tissue
  • 1heart
  • 1liver
  • 1musculature of body
  • 1vasculature
Life stage
  • 5adult
Date released
  • 4April, 2025
  • 1February, 2023
  • 1May, 2022
  • 1November, 2021
Software used
  • 1cellranger-atac
Lab
  • 6AMP-T2D consortium
  • 1Bing Ren, UCSD
Project
  • 6AMP
  • 1ENCODE
RFA
  • 6AMP
  • 1ENCODE3
biosample_term_name!
  • skeletal muscle tissue

Showing 7 of 7 results

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  • FileSet

    DSR186384

    released

    Embeddings file set: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR547861

    released

    Embeddings file set: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR856740

    released

    Embeddings file set: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR940154

    released

    Embeddings file set: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR549TWY

    released

    Embeddings file set: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR132DPW

    released

    Embeddings file set: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR838CLG

    released

    Embeddings file set: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
    Lab: Bing Ren, UCSD
    Project: ENCODE
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