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Schema
Citing CMDGA
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Embeddings type
2
Accessible chromatin
2
Gene expression
Embeddings Category
4
umap
Underlying Assay
10X snATAC-seq
10X snRNA-seq
2
10X scRNA-seq
2
sciATAC-seq
10X scATAC-seq
Available data
4
h5ad
1
mtx
1
tsv
File set status
4
released
Organism
2
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
2
islet of Langerhans
2
pancreas
1
peripheral blood mononuclear cell
1
tissues
Tissue term
3
pancreas
1
blood
1
tissues
Organ
3
pancreas
1
blood
1
bodily fluid
Life stage
adult
Date released
1
August, 2021
1
February, 2021
1
March, 2023
1
November, 2021
Software used
1
r
Lab
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
1
T1D
RFA
2
AMP
1
ENCODE3
1
T1D
biosample_term_name!
small intestine
embeddings_underlying_assay!
10X scATAC-seq
10X snATAC-seq
10X snRNA-seq
relevant_life_stage!
adult
Showing 4 of 4 results
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP