Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Embeddings type
1
Accessible chromatin
Embeddings Category
1
umap
Underlying Assay
1
10X snATAC-seq
Available data
1
bed bed3
1
cloupe
1
mtx
1
tbi
1
tsv
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
6
islet of Langerhans
4
liver
4
pancreas
3
artery
3
heart
3
lung
3
skeletal muscle
2
kidney
2
peripheral blood mononuclear cell
2
skeletal muscle tissue
2
subcutaneous adipose tissue
1
bladder organ
1
blood
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
immune system
1
large intestine
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
1
visceral fat
Tissue term
1
carotid canal
Organ
1
bone element
Date released
1
May, 2022
Software used
1
cellranger-atac
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
Showing 1 of 1 results
table-tab-icon
matrix-icon
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP