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Citing CMDGA
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Embeddings type
Accessible chromatin
3
Gene expression
Embeddings Category
3
umap
Underlying Assay
2
10X scRNA-seq
1
10X snRNA-seq
Available data
3
h5ad
1
rds
File set status
3
released
Organism
3
Homo sapiens
Biosample type
4
tissue
primary cell
Biosample term
1
kidney
1
lung
1
pancreas
Tissue term
heart
1
kidney
1
lung
1
pancreas
Organ
1
kidney
1
lung
1
pancreas
Life stage
1
adult
Date released
May, 2022
1
March, 2023
1
September, 2021
1
September, 2023
Software used
1
r
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
2
AMP
1
LungMap
RFA
2
AMP
1
LungMap2
biosample_type!
primary cell
embeddings_type!
Accessible chromatin
month_released!
May, 2022
tissue_term_name!
heart
Showing 3 of 3 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap