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Schema
Citing CMDGA
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Embeddings type
3
Gene expression
1
Accessible chromatin
Embeddings Category
4
umap
Underlying Assay
3
10X scRNA-seq
2
Smart-seq
1
10X snATAC-seq
Available data
3
h5ad
1
bed bed3
1
cloupe
1
mtx
1
rds
1
tbi
1
tsv
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
primary cell
Biosample term
2
kidney
1
bone marrow
1
carotid canal
Tissue term
2
kidney
1
bone marrow
1
carotid canal
Organ
4
pancreas
3
lung
3
musculature of body
2
bone element
2
heart
2
intestine
2
kidney
2
mouth
1
adipose tissue
1
blood
1
bodily fluid
1
bone marrow
1
connective tissue
1
eye
1
large intestine
1
liver
1
lymph node
1
mammary gland
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
0
epithelium
Life stage
3
adult
Date released
3
May, 2022
1
September, 2023
Software used
1
cellranger-atac
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_type!
primary cell
Showing 4 of 4 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR957UZP
released
Embeddings file set
: The human cell atlas of Kidney from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR363VWA
released
Embeddings file set
: The human cell atlas of Bone Marrow from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP