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Embeddings type
Accessible chromatin
3
Gene expression
Embeddings Category
3
umap
Underlying Assay
2
10X scRNA-seq
Available data
2
h5ad
1
rds
File set status
3
released
Organism
2
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
2
pancreas
1
heart
1
islet of Langerhans
1
peripheral blood mononuclear cell
Tissue term
2
pancreas
1
blood
1
heart
Organ
2
pancreas
1
blood
1
bodily fluid
1
heart
Date released
1
August, 2021
1
June, 2025
1
March, 2023
Software used
1
r
Lab
49
AMP-T2D consortium
3
Kyle Gaulton, UCSD
1
Franck Mauvais-Jarvis Lab
1
Xin Sun, UCSD
Project
2
AMP
1
T1D
RFA
1
AMP
1
AMP2
1
T1D
embeddings_type!
Accessible chromatin
Showing 3 of 3 results
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FileSet
DSR445357
released
Embeddings file set
: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D