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Embeddings type
5
Gene expression
Accessible chromatin
Embeddings Category
5
umap
Underlying Assay
4
10X scRNA-seq
1
Smart-seq
Available data
3
h5ad
1
mtx
File set status
5
released
Organism
3
Homo sapiens
Biosample type
5
tissue
1
primary cell
Biosample term
4
pancreas
2
islet of Langerhans
1
peripheral blood mononuclear cell
Tissue term
5
heart
5
pancreas
4
liver
3
kidney
2
artery
2
blood
2
fat pad
2
lung
2
skeletal muscle tissue
1
adipose
1
bladder organ
1
blood vessel
1
bone marrow
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
hypothalamus
1
large intestine
1
leukocyte
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle
1
muscle organ
1
prostate gland
1
skeletal muscle
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
1
visceral abdominal adipose tissue
Organ
5
pancreas
1
blood
1
bodily fluid
Life stage
1
adult
Date released
1
August, 2021
1
June, 2025
1
March, 2023
1
May, 2022
1
October, 2024
Software used
1
r
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Franck Mauvais-Jarvis Lab
Project
3
AMP
1
T1D
1
community
RFA
3
AMP
1
T1D
1
community
embeddings_type!
Accessible chromatin
Showing 5 of 5 results
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FileSet
DSR975305
released
Embeddings file set
: Single cell reference map of human pancreatic islets
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR867WVO
released
Embeddings file set
: Single cell RNA-seq data in human pancreatic islets for 52 donors
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR612IYX
released
Embeddings file set
: The human cell atlas of Pancreas from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D