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Schema
Citing CMDGA
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Embeddings type
2
Accessible chromatin
1
Gene expression
Embeddings Category
3
umap
Underlying Assay
10X scRNA-seq
27
Smart-seq
2
10X snATAC-seq
1
10X snRNA-seq
Available data
3
mtx
3
tsv
2
h5ad
1
bed bed3
1
cloupe
1
tbi
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
skeletal muscle tissue
1
carotid canal
Tissue term
2
skeletal muscle tissue
1
carotid canal
Organ
2
musculature of body
1
bone element
Date released
3
May, 2022
2
September, 2021
1
August, 2021
1
February, 2021
February, 2023
1
March, 2024
1
November, 2021
1
September, 2020
Software used
1
cellranger-atac
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
embeddings_underlying_assay!
10X scRNA-seq
month_released!
February, 2023
organ_slims!
vasculature
Showing 3 of 3 results
table-tab-icon
matrix-icon
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP