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Citing CMDGA
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Embeddings type
2
Accessible chromatin
2
Gene expression
Embeddings Category
4
umap
Underlying Assay
2
10X scRNA-seq
10X snRNA-seq
2
sciATAC-seq
Available data
4
h5ad
2
rds
1
mtx
1
tsv
File set status
4
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
1
islet of Langerhans
1
kidney
1
pancreas
1
tissues
Tissue term
2
pancreas
1
kidney
1
tissues
Organ
4
pancreas
blood
2
bodily fluid
1
kidney
lung
Life stage
1
adult
Date released
May, 2022
1
February, 2021
1
March, 2023
1
November, 2021
1
September, 2023
Software used
1
r
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
embeddings_underlying_assay!
10X snRNA-seq
month_released!
May, 2022
organ_slims!
blood
lung
Showing 4 of 4 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP