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Clear Filters
Embeddings type
  • 4Accessible chromatin
  • 1Gene expression
Embeddings Category
  • 5umap
Underlying Assay
  • 310X snATAC-seq
  • 10X snRNA-seq
  • 110X scRNA-seq
  • 1sciATAC-seq
Available data
  • 43h5ad
  • 13rds
  • 7tsv
  • 5mtx
  • 1bed bed3
  • 1cloupe
  • 1tbi
File set status
  • 5released
Genome assembly (visualization)
  • 1hg19
Organism
  • 2Homo sapiens
Biosample type
  • 4tissue
Biosample term
  • 2islet of Langerhans
  • 1carotid canal
  • 1skeletal muscle tissue
  • 1tissues
Tissue term
  • 2pancreas
  • 1carotid canal
  • 1skeletal muscle tissue
  • 1tissues
Organ
  • 2pancreas
  • 1bone element
  • 1musculature of body
Date released
  • 2May, 2022
  • 2October, 2024
  • 1November, 2021
Software used
  • 1cellranger-atac
Lab
  • 2AMP-T2D consortium
  • 2Franck Mauvais-Jarvis Lab
  • 1Bing Ren, UCSD
Project
  • 2AMP
  • 2community
  • 1ENCODE
RFA
  • 2AMP
  • 2community
  • 1ENCODE3
embeddings_underlying_assay!
  • 10X snRNA-seq

Showing 5 of 5 results

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  • FileSet

    DSR662TAR

    released

    Embeddings file set: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
    Lab: Franck Mauvais-Jarvis Lab
    Project: community
  • FileSet

    DSR867WVO

    released

    Embeddings file set: Single cell RNA-seq data in human pancreatic islets for 52 donors
    Lab: Franck Mauvais-Jarvis Lab
    Project: community
  • FileSet

    DSR384UWH

    released

    Embeddings file set: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR132DPW

    released

    Embeddings file set: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR838CLG

    released

    Embeddings file set: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
    Lab: Bing Ren, UCSD
    Project: ENCODE
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