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Embeddings type
5
Gene expression
3
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
8
umap
Underlying Assay
5
10X scRNA-seq
2
10X snATAC-seq
1
10X scATAC-seq
Available data
h5ad
9
tsv
7
mtx
6
rds
1
bed bed3
1
cloupe
1
tbi
File set status
8
released
Genome assembly (visualization)
1
hg19
Organism
6
Homo sapiens
Biosample type
8
tissue
Biosample term
3
islet of Langerhans
1
artery
1
carotid canal
1
liver
1
skeletal muscle
1
visceral fat
Tissue term
3
pancreas
1
blood vessel
1
carotid canal
1
fat pad
1
liver
1
muscle
Organ
3
pancreas
1
adipose tissue
1
artery
1
blood vessel
1
bone element
1
connective tissue
1
liver
1
musculature of body
1
vasculature
Life stage
4
adult
Date released
4
February, 2025
2
October, 2024
1
March, 2024
1
May, 2022
Software used
1
cellranger-atac
Lab
5
AMP-T2D consortium
2
Franck Mauvais-Jarvis Lab
1
Kyle Gaulton, UCSD
Project
6
AMP
2
community
RFA
6
AMP
2
community
embeddings_underlying_assay!
Smart-seq
files.file_type!
h5ad
Showing 8 of 8 results
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FileSet
DSR928DPD
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 60 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024XGL
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR917JBY
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR941LCB
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 140 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR867WVO
released
Embeddings file set
: Single cell RNA-seq data in human pancreatic islets for 52 donors
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP