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Embeddings type
3
Accessible chromatin
Embeddings Category
3
umap
Underlying Assay
3
10X snATAC-seq
2
10X snRNA-seq
1
10X scRNA-seq
1
sciATAC-seq
Available data
7
h5ad
6
tsv
3
mtx
1
bed bed3
1
cloupe
1
tbi
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
3
tissue
Biosample term
1
carotid canal
1
islet of Langerhans
1
skeletal muscle tissue
Tissue term
1
carotid canal
1
pancreas
1
skeletal muscle tissue
Organ
1
bone element
1
musculature of body
1
pancreas
Date released
2
May, 2022
1
October, 2024
Software used
1
cellranger-atac
Lab
2
AMP-T2D consortium
1
Franck Mauvais-Jarvis Lab
Project
2
AMP
1
community
RFA
2
AMP
1
community
Showing 3 of 3 results
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FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP