Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Embeddings type
7
Accessible chromatin
Embeddings Category
7
umap
Underlying Assay
39
10X scRNA-seq
28
Smart-seq
7
10X snATAC-seq
4
10X snRNA-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
5
h5ad
4
tsv
2
mtx
1
bed bed3
1
cloupe
1
tbi
File set status
7
released
Genome assembly (visualization)
1
hg19
Organism
6
Homo sapiens
Biosample type
7
tissue
1
primary cell
Biosample term
2
islet of Langerhans
1
artery
1
carotid canal
1
liver
1
lung
1
pancreas
1
peripheral blood mononuclear cell
1
subcutaneous adipose tissue
Tissue term
2
pancreas
skeletal muscle tissue
1
adipose
1
artery
1
blood
1
carotid canal
1
liver
1
lung
Organ
2
pancreas
1
adipose tissue
1
artery
1
blood
1
blood vessel
1
bodily fluid
1
bone element
1
connective tissue
1
liver
1
lung
1
vasculature
Life stage
3
adult
Date released
3
April, 2025
1
August, 2021
1
May, 2022
1
October, 2024
1
September, 2021
Software used
1
cellranger-atac
Lab
4
AMP-T2D consortium
1
Franck Mauvais-Jarvis Lab
1
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
4
AMP
1
LungMap
1
T1D
1
community
RFA
4
AMP
1
LungMap2
1
T1D
1
community
tissue_term_name!
skeletal muscle tissue
Showing 7 of 7 results
table-tab-icon
matrix-icon
FileSet
DSR547861
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR856740
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR940154
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D