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Embeddings type
3
Accessible chromatin
2
Gene expression
Cohort
1
HPAP
Embeddings Category
5
umap
Underlying Assay
2
10X snATAC-seq
1
10X scATAC-seq
1
10X scRNA-seq
Available data
h5ad
7
mtx
5
tsv
4
rds
1
bed bed3
1
cloupe
1
tbi
File set status
5
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
5
tissue
Biosample term
3
islet of Langerhans
1
carotid canal
1
heart
Tissue term
3
pancreas
1
carotid canal
1
heart
Organ
3
pancreas
1
bone element
1
heart
Date released
2
October, 2024
1
June, 2025
1
March, 2024
1
May, 2022
Software used
1
cellranger-atac
Lab
2
Franck Mauvais-Jarvis Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
3
AMP
2
community
RFA
2
AMP
2
community
1
AMP2
files.file_type!
h5ad
tissue_term_name!!
blood vessel
Showing 5 of 5 results
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FileSet
DSR445357
released
Embeddings file set
: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR867WVO
released
Embeddings file set
: Single cell RNA-seq data in human pancreatic islets for 52 donors
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP