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Citing CMDGA
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Embeddings type
3
Accessible chromatin
3
Gene expression
Cohort
1
HPAP
Embeddings Category
6
umap
Underlying Assay
3
10X scRNA-seq
1
10X scATAC-seq
1
10X snATAC-seq
1
sciATAC-seq
Available data
6
h5ad
2
rds
mtx
1
tsv
File set status
6
released
Organism
5
Homo sapiens
Biosample type
6
tissue
2
primary cell
Biosample term
4
islet of Langerhans
3
pancreas
2
peripheral blood mononuclear cell
1
kidney
Tissue term
5
pancreas
2
blood
lung
heart
1
kidney
Organ
5
pancreas
2
blood
2
bodily fluid
1
kidney
Life stage
1
adult
Date released
May, 2022
2
August, 2021
1
February, 2021
1
March, 2023
1
March, 2024
1
September, 2023
Software used
1
r
Lab
5
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
4
AMP
2
T1D
RFA
4
AMP
2
T1D
files.file_type!
mtx
month_released!
May, 2022
tissue_term_name!
heart
lung
Showing 6 of 6 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D