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Embeddings type
4
Accessible chromatin
3
Gene expression
Embeddings Category
7
umap
Underlying Assay
3
10X snATAC-seq
2
10X snRNA-seq
1
10X scRNA-seq
1
sciATAC-seq
Available data
49
h5ad
9
tsv
7
mtx
6
rds
1
bed bed3
1
cloupe
1
tbi
File set status
7
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
6
tissue
Biosample term
2
islet of Langerhans
2
skeletal muscle tissue
1
carotid canal
1
heart
1
tissues
Tissue term
2
pancreas
2
skeletal muscle tissue
1
carotid canal
1
heart
1
tissues
Organ
2
musculature of body
2
pancreas
1
bone element
1
heart
Life stage
1
adult
Date released
3
May, 2022
2
October, 2024
1
February, 2023
1
November, 2021
Software used
1
cellranger-atac
Lab
4
AMP-T2D consortium
2
Franck Mauvais-Jarvis Lab
1
Bing Ren, UCSD
Project
4
AMP
2
community
1
ENCODE
RFA
4
AMP
2
community
1
ENCODE3
Showing 7 of 7 results
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FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR867WVO
released
Embeddings file set
: Single cell RNA-seq data in human pancreatic islets for 52 donors
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE