Search – Common Metabolic Diseases Genome Atlas

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Publication
released
Systematic Functional Characterization of Candidate Causal Genes for Type 2 Diabetes Risk Variants
Thomsen SK, Ceroni A, van de Bunt M, et al.
December 2016;(65(12)):3805-3811.
- PMID:27554474
- doi:10.2337/db16-0361
Publication
released
GWAS-informed data integration and non-coding CRISPRi screen illuminate genetic etiology of bone mineral density
Mitchell Conery, James A. Pippin, Yadav Wagley, et al.
Genome Biology. 2025-10-03;26(1):331.
Publication
released
A comprehensive spatio-cellular map of the human hypothalamus
John A. Tadross, Lukas Steuernagel, Georgina K. C. Dowsett, et al.
Nature. 2025-02-05;639(8055):708-716.
URL: https://www.nature.com/articles/s41586-024-08504-8
Publication
released
Human skeletal muscle aging atlas
Veronika R. Kedlian, Yaning Wang, Tianliang Liu, et al.
Nature Aging. 2024-04-15;
- PMID:38622407
- doi:10.1038/s43587-024-00613-3
URL: https://www.muscleageingcellatlas.org
Data summary: The processed data objects generated within this study are available for browsing
URL: https://doi.org/10.7272/Q65X273X
Data summary: Raw sequencing data for the newly generated libraries have been deposited to ArrayExpress…
Data summary: Mouse datasets were obtained from GSE110878, GSE138707, GSE134540, GSE143476, GSE149590 and…
Data summary: All other data supporting the findings of this study are available from the corresponding authors…
URL: https://github.com/Teichlab/SKM_ageing_atlas
Data summary: Code availability: All custom notebooks and scripts used in this study have been deposited to
Publication
released
Primary osteoarthritis chondrocyte map of chromatin conformation reveals novel candidate effector genes
Norbert Bittner, Chenfu Shi, Danyun Zhao, et al.
Ann Rheum Dis. 2024-03-13;:ard-2023-224945.
- PMID:38479789
- doi:10.1136/ard-2023-224945
Publication
released
Cell-Type Composition Affects Adipose Gene Expression Associations With Cardiometabolic Traits
Sarah M Brotman, Anniina Oravilahti, Jonathan D Rosen, et al.
Diabetes. 2023-11-01;72(11):1707-1718.
Publication
released
A comparative atlas of single-cell chromatin accessibility in the human brain
Yang Eric Li, Sebastian Preissl, Michael Miller, et al.
Science. 2023-10-13;382(6667)
Publication
released
Plasma proteomic associations with genetics and health in the UK Biobank
Benjamin B Sun, Joshua Chiou, Matthew Traylor, et al.
Nature. 2023-10-04;622(7982):329-338.
URL: http://ukb-ppp.gwas.eu
Data summary: Proteo-genomic results and summary association data are available through an interactive portal.
URL: https://www.ukbiobank.ac.uk/enable-your-research
Data summary: Underlying NPX measures are available through the UK Biobank Research Analysis Portal.
URL: https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=1839
Data summary: UKB has catalogued the dataset in Category 1839, under ‘Field 30900’, described in greater detail…
Publication
released
An atlas of healthy and injured cell states and niches in the human kidney
Blue B. Lake, Rajasree Menon, Seth Winfree, et al.
Nature. 2023-07-19;619(7970):585-594.
URL: https://www.nature.com/articles/s41586-023-05769-3
Publication
released
Dynamic chromatin organization and regulatory interactions in human endothelial cell differentiation
Kris G Alavattam, Katie A Mitzelfelt, Giancarlo Bonora, et al.
Stem Cell Reports. 2023-01-10;18(1):159-174.
Available supplemental data: website
URL: https://data.4dnucleome.org/Alavattam-Mitzelfelt-endothelial-differentiation-chromatin
Data summary: Data have been deposited in the 4DN data portal and are publicly available at…
Available supplemental data: website
Data summary: Previously published CM differentiation data are available from GEO: GSE106690 (Bertero et al.,…
Available supplemental data: website
URL: https://github.com/Noble-Lab/
Data summary: Source code for analyses performed in this study is available at…
Publication
released
A genome-wide CRISPR screen identifies CALCOCO2 as a regulator of beta cell function influencing type 2 diabetes risk
Antje K Rottner, Yingying Ye, Elena Navarro-Guerrero, et al.
Nat Genet. 2022-12-21;55(1):54-65.
URL: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9839450/
Available supplemental data: website
File format: text
URL: https://hugeamp.org:8000/research.html?pageid=beta_cell_249
Data summary: Pancreatic beta cell function and type 2 diabetes predicted effector genes (Rottner AK et al., 2023)
Publication
released
Single nuclei profiling identifies cell specific markers of skeletal muscle aging, frailty, and senescence
Kevin Perez, Serban Ciotlos, Julia McGirr, et al.
Aging. 2022-12-13;14(23):9393-9422.
Publication
released
Long-range chromosomal interactions increase and mark repressed gene expression during adipogenesis
Kristina M Garske, Caroline Comenho, David Z Pan, et al.
Epigenetics. 2022-12-01;17(13):1849-1862.
Available supplemental data: website
File format: other format
URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE129574
Data summary: Assay for transposase accessible chromatin (ATAC) -seq libraries were produced from human primary…
Publication
released
Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution
Charles A Herring, Rebecca K Simmons, Saskia Freytag, et al.
Cell. 2022-10-31;185(23):4428-4447.
- doi:10.1016/j.cell.2022.09.039
- PMID:36318921
Available supplemental data: website
File format: other format
URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168408
Data summary: Single-nuclei RNA-seq and single-nuclei ATAC-seq data have been deposited at GEO under accession…
Available supplemental data: website
URL: http://brain.listerlab.org/
Data summary: Accompanying interactive browsers for this study are available at http://brain.listerlab.org.
Available supplemental data: website
URL: http://development.psychencode.org/
Data summary: All data for the Velmeshev et al. study is publicly available through the Sequence Read Archive,…
Available supplemental data: website
URL: https://www.sciencedirect.com/science/article/pii/S0092867422012582?via%3Dihub#sec4.1
Data summary: All original code has been deposited at Zenodo and is publicly available as of the date of…
Available supplemental data: website
URL: https://www.sciencedirect.com/science/article/pii/S0092867422012582?via%3Dihub#sec4.2.1
Data summary: Any additional information required to reanalyze the data reported in this work paper is available…
Publication
released
Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex
Ana Uzquiano, Amanda J Kedaigle, Martina Pigoni, et al.
Cell. 2022-09-29;185(20):3770-3788.e27.
Available supplemental data: website
URL: https://www.synapse.org
Data summary: Read-level data from scRNA-seq, scATAC-seq, SHARE-seq, and Slide-seq data, supporting the findings…
Available supplemental data: website
URL: https://singlecell.broadinstitute.org/single_cell/study/SCP1756
Data summary: The count-level data and meta-data have been deposited at the Single Cell Portal.
Available supplemental data: website
URL: https://doi.org/10.17632/7cxccpv4hg.1
Data summary: Supplemental data related to Figures 1, ,3,3, ,4,4, ,5,5, ,6,6, and and77 has been deposited…
Available supplemental data: website
URL: https://github.com/AmandaKedaigle/OrganoidAtlas
Data summary: Code used during data analysis is available at GitHub. d Any additional information required to…
Available supplemental data: website
URL: http://solo.bmap.ucla.edu/shiny/webapp/
Data summary: Data from previous publications that was used in this study can be found at the Gene Expression…

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Showing 15 of 223 results