Search – Common Metabolic Diseases Genome Atlas

Showing 25 of 25 results

FileSet
DSR291812
released
Embeddings file set: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab: Stephen Parker, UMich
Project: AMP
FileSet
DSR144369
released
Embeddings file set: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab: Stephen Parker, UMich
Project: AMP
FileSet
DSR772NPS
released
Embeddings file set: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR549TWY
released
Embeddings file set: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR583ADB
released
Embeddings file set: The human cell atlas of Vasculature from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR320FCS
released
Embeddings file set: The human cell atlas of Uterus from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR882MYH
released
Embeddings file set: The human cell atlas of Tongue from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR480ZPZ
released
Embeddings file set: The human cell atlas of Small Intestine from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR843THS
released
Embeddings file set: The human cell atlas of Skin from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR181DNL
released
Embeddings file set: The human cell atlas of Salivary Gland from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR451YDC
released
Embeddings file set: The human cell atlas of Muscle from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR885FKV
released
Embeddings file set: The human cell atlas of Mammary Gland from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR304MNH
released
Embeddings file set: The human cell atlas of Lung from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR956GXS
released
Embeddings file set: The human cell atlas of Liver from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR957UZP
released
Embeddings file set: The human cell atlas of Kidney from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR271MPP
released
Embeddings file set: The human cell atlas of Heart from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR284DTT
released
Embeddings file set: The human cell atlas of Blood from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR678KMD
released
Embeddings file set: The human cell atlas of endothelial cells from 24 organs of 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR622GML
released
Embeddings file set: The human cell atlas of all cells from 24 organs of 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR493VFJ
released
Embeddings file set: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR132DPW
released
Embeddings file set: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR838CLG
released
Embeddings file set: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab: Bing Ren, UCSD
Project: ENCODE
FileSet
DSR675TJW
released
Embeddings file set: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab: Kyle Gaulton, UCSD
Project: T1D
FileSet
DSR322WJB
released
Embeddings file set: Islet snATAC-seq from control samples
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR047LET
released
Embeddings file set: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab: Kyle Gaulton, UCSD
Project: T1D