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Embeddings type
3
Accessible chromatin
2
Gene expression
Cohort
1
HPAP
Embeddings Category
5
umap
Underlying Assay
2
10X scRNA-seq
1
10X scATAC-seq
1
10X snATAC-seq
1
sciATAC-seq
Available data
4
h5ad
1
rds
File set status
5
released
Organism
4
Homo sapiens
Biosample type
5
tissue
2
primary cell
Biosample term
4
islet of Langerhans
3
pancreas
2
peripheral blood mononuclear cell
Tissue term
5
pancreas
2
blood
Organ
5
pancreas
2
blood
2
bodily fluid
Date released
2
August, 2021
1
February, 2021
1
March, 2023
1
March, 2024
Software used
1
r
Lab
47
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Franck Mauvais-Jarvis Lab
2
Xin Sun, UCSD
1
Bing Ren, UCSD
Project
3
AMP
2
T1D
RFA
3
AMP
2
T1D
Showing 5 of 5 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D